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I have taken care of many patients that refused to take antibiotics for strep throat. Several years later they were dying of heart failure due to the Strep bacteria migrating into the heart muscle. Also, my paternal grandmother died of glomerulonephritis because she refused to take antibiotics for her bacterial infection years earlier.
Yes, you can get a yeast infection after taking antibiotics, but it doesn't always happen.
I hope that whatever you decide it works for you and that your strep throat heals.
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